Chapter 28 Final Processing Notes

28.1 R Packages Used

The analyses presented above and this report were completed using R (R Core Team 2017) with the following packages:

  1. haven (Wickham and Miller 2018)
  2. dplyr (Wickham et al. 2018)
  3. tidyr (Wickham and Henry 2018)
  4. psych (Revelle 2018)
  5. knitr (Xie 2018, 2015, 2014)
  6. knitcitations (Boettiger 2017)
  7. printr (Xie 2017)
  8. likert (Bryer and Speerschneider 2016)

28.2 R Session Info as of 2018-10-25 15:19:59

## R version 3.4.3 (2017-11-30)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 17134)
## 
## Matrix products: default
## 
## locale:
## [1] LC_COLLATE=English_United States.1252 
## [2] LC_CTYPE=English_United States.1252   
## [3] LC_MONETARY=English_United States.1252
## [4] LC_NUMERIC=C                          
## [5] LC_TIME=English_United States.1252    
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] likert_1.3.5        xtable_1.8-2        ggplot2_2.2.1      
##  [4] printr_0.1          knitcitations_1.0.8 knitr_1.20         
##  [7] psych_1.8.3.3       tidyr_0.8.0         dplyr_0.7.6        
## [10] haven_1.1.1        
## 
## loaded via a namespace (and not attached):
##  [1] Rcpp_0.12.16       plyr_1.8.4         pillar_1.2.1      
##  [4] compiler_3.4.3     bindr_0.1.1        forcats_0.3.0     
##  [7] tools_3.4.3        digest_0.6.15      gtable_0.2.0      
## [10] lubridate_1.7.4    jsonlite_1.5       evaluate_0.10.1   
## [13] tibble_1.4.2       nlme_3.1-137       lattice_0.20-35   
## [16] pkgconfig_2.0.1    rlang_0.2.0        bibtex_0.4.2      
## [19] rstudioapi_0.7     curl_3.2           yaml_2.1.19       
## [22] parallel_3.4.3     xfun_0.3           bindrcpp_0.2.2    
## [25] gridExtra_2.3      xml2_1.2.0         RefManageR_0.14.20
## [28] stringr_1.3.0      httr_1.3.1         rprojroot_1.3-2   
## [31] grid_3.4.3         tidyselect_0.2.4   glue_1.2.0        
## [34] R6_2.2.2           foreign_0.8-69     rmarkdown_1.10    
## [37] bookdown_0.7       reshape2_1.4.3     purrr_0.2.4       
## [40] magrittr_1.5       scales_0.5.0       backports_1.1.2   
## [43] htmltools_0.3.6    assertthat_0.2.0   mnormt_1.5-5      
## [46] colorspace_1.3-2   stringi_1.1.7      lazyeval_0.2.1    
## [49] munsell_0.4.3

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Bihum, Joan T., Marianne Z. Wamboldt, Lesile A. Gavin, and Frederick S. Wamboldt. 2002. “Can the Family Assessment Device (FAD) Be Used with School Aged Children?” Family Process 41 (4). Wiley:723–31. https://doi.org/10.1111/j.1545-5300.2002.00723.x.

Boettiger, Carl. 2017. Knitcitations: Citations for ’Knitr’ Markdown Files. https://CRAN.R-project.org/package=knitcitations.

Bryer, Jason, and Kimberly Speerschneider. 2016. Likert: Analysis and Visualization Likert Items. https://CRAN.R-project.org/package=likert.

Buysse, Daniel J., Charles F. Reynolds, Timothy H. Monk, Susan R. Berman, and David J. Kupfer. 1989. “The Pittsburgh Sleep Quality Index: A New Instrument for Psychiatric Practice and Research.” Psychiatry Research 28 (2). Elsevier BV:193–213. https://doi.org/10.1016/0165-1781(89)90047-4.

Corbi‘ere, Marc, Arielle Bonneville-Roussy, Ren’ee-Louise Franche, Marie-France Coutu, Manon Choini‘ere, Marie-Jos’e Durand, and Aline Boulanger. 2011. “Further Validation of the BDI-II Among People with Chronic Pain Originating from Musculoskeletal Disorders.” The Clinical Journal of Pain 27 (1). Ovid Technologies (Wolters Kluwer Health):62–69. https://doi.org/10.1097/ajp.0b013e3181eef903.

CROFT, JANET B., NORA L. KEENAN, DAVID P. SHERIDAN, FRANCES C. WHEELER, and MARJORIE A. SPEERS. 1995. “Waist-to-Hip Ratio in a Biracial Population.” Journal of the American Dietetic Association 95 (1). Elsevier BV:60–64. https://doi.org/10.1016/s0002-8223(95)00014-3.

Epstein, Nathan B., Lawrence M. Baldwin, and Duane S. Bishop. 1983. “The McMaster Family Assessment Device.” Journal of Marital and Family Therapy 9 (2):171–80. https://doi.org/10.1111/j.1752-0606.1983.tb01497.x.

Keyes, Corey L. M. 2002. “The Mental Health Continuum: From Languishing to Flourishing in Life.” Journal of Health and Social Behavior 43 (2). SAGE Publications:207. https://doi.org/10.2307/3090197.

Miller, Ivan W., Nathan B. Epstein, Duane S. Bishop, and Gabor I. Keitner. 1985. “The McMaster Family Assessment Device: Reliability and Validity.” Journal of Marital and Family Therapy 11 (4):345–56. https://doi.org/10.1111/j.1752-0606.1985.tb00028.x.

Mitchell, Pamela H., Lynda Powell, James Blumenthal, Jennifer Norten, Gail Ironson, Carol Rogers Pitula, Erika Sivarajan Froelicher, et al. 2003. “A Short Social Support Measure for Patients Recovering from Myocardial Infarction.” Journal of Cardiopulmonary Rehabilitation 23 (6). Ovid Technologies (Wolters Kluwer Health):398–403. https://doi.org/10.1097/00008483-200311000-00001.

R Core Team. 2017. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/.

Revelle, William. 2018. Psych: Procedures for Psychological, Psychometric, and Personality Research. Evanston, Illinois: Northwestern University. https://CRAN.R-project.org/package=psych.

Ross, R., T. Berentzen, A. J. Bradshaw, I. Janssen, H. S. Kahn, P. T. Katzmarzyk, J. L. Kuk, et al. 2008. “Does the Relationship Between Waist Circumference, Morbidity and Mortality Depend on Measurement Protocol for Waist Circumference?” Obesity Reviews 9 (4). Wiley:312–25. https://doi.org/10.1111/j.1467-789x.2007.00411.x.

Wickham, Hadley, Romain François, Lionel Henry, and Kirill Müller. 2018. Dplyr: A Grammar of Data Manipulation. https://CRAN.R-project.org/package=dplyr.

Wickham, Hadley, and Lionel Henry. 2018. Tidyr: Easily Tidy Data with ’Spread()’ and ’Gather()’ Functions. https://CRAN.R-project.org/package=tidyr.

Wickham, Hadley, and Evan Miller. 2018. Haven: Import and Export ’Spss’, ’Stata’ and ’Sas’ Files. https://CRAN.R-project.org/package=haven.

Xie, Yihui. 2014. “Knitr: A Comprehensive Tool for Reproducible Research in R.” In Implementing Reproducible Computational Research, edited by Victoria Stodden, Friedrich Leisch, and Roger D. Peng. Chapman; Hall/CRC. http://www.crcpress.com/product/isbn/9781466561595.

———. 2015. Dynamic Documents with R and Knitr. 2nd ed. Boca Raton, Florida: Chapman; Hall/CRC. https://yihui.name/knitr/.

———. 2017. Printr: Automatically Print R Objects to Appropriate Formats According to the ’Knitr’ Output Format. https://CRAN.R-project.org/package=printr.

———. 2018. Knitr: A General-Purpose Package for Dynamic Report Generation in R. https://yihui.name/knitr/.

References

R Core Team. 2017. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/.

Wickham, Hadley, and Evan Miller. 2018. Haven: Import and Export ’Spss’, ’Stata’ and ’Sas’ Files. https://CRAN.R-project.org/package=haven.

Wickham, Hadley, Romain François, Lionel Henry, and Kirill Müller. 2018. Dplyr: A Grammar of Data Manipulation. https://CRAN.R-project.org/package=dplyr.

Wickham, Hadley, and Lionel Henry. 2018. Tidyr: Easily Tidy Data with ’Spread()’ and ’Gather()’ Functions. https://CRAN.R-project.org/package=tidyr.

Revelle, William. 2018. Psych: Procedures for Psychological, Psychometric, and Personality Research. Evanston, Illinois: Northwestern University. https://CRAN.R-project.org/package=psych.

Xie, Yihui. 2018. Knitr: A General-Purpose Package for Dynamic Report Generation in R. https://yihui.name/knitr/.

Xie, Yihui. 2015. Dynamic Documents with R and Knitr. 2nd ed. Boca Raton, Florida: Chapman; Hall/CRC. https://yihui.name/knitr/.

Xie, Yihui. 2014. “Knitr: A Comprehensive Tool for Reproducible Research in R.” In Implementing Reproducible Computational Research, edited by Victoria Stodden, Friedrich Leisch, and Roger D. Peng. Chapman; Hall/CRC. http://www.crcpress.com/product/isbn/9781466561595.

Boettiger, Carl. 2017. Knitcitations: Citations for ’Knitr’ Markdown Files. https://CRAN.R-project.org/package=knitcitations.

Xie, Yihui. 2017. Printr: Automatically Print R Objects to Appropriate Formats According to the ’Knitr’ Output Format. https://CRAN.R-project.org/package=printr.

Bryer, Jason, and Kimberly Speerschneider. 2016. Likert: Analysis and Visualization Likert Items. https://CRAN.R-project.org/package=likert.